GENccEnrichResult-class
                        Class '"GENccEnrichResult"'
HyperGParamsCC-class    Class "HyperGParamsCC"
HyperGResultCC-class    Class "HyperGResultCC"
breakEdges-methods      Methods for Function 'breakEdges' in Package
                        'categoryCompare'
categoryCompare-package
                        Meta-analysis of high-throughput experiments
                        using feature annotations
ccCompare-methods       Comparison of enriched annotations
ccCompareCollection-class
                        Class '"ccCompareCollection"'
ccCompareGeneric-methods
                        Methods for Function 'ccCompareGeneric' in
                        Package 'categoryCompare'
ccCompareResult-class   Class '"ccCompareResult"'
ccData                  Test data for 'categoryCompare'
ccEnrich-method         Perform annotation enrichment for multiple gene
                        lists
ccEnrichCollection-class
                        Class "ccEnrichCollection"
ccEnrichResult-class    Class "ccEnrichResult"
ccGeneList-class        Class "ccGeneList"
ccOptions-class         Class "ccOptions"
ccOutCyt-methods        Methods for Function 'ccOutCyt' in Package
                        'categoryCompare'
ccSigList-class         Class '"ccSigList"'
cwReload-methods        Methods for Function 'cwReload' in Package
                        'categoryCompare'
cytOutData-methods      Methods for Function 'cytOutData'
cytOutNodes-methods     Methods for Function 'cytOutNodes'
fdr                     Number of FDR runs to perform
getGeneSymbol           Entrez to name, symbol, GO and path conversion,
                        as well as general ID to ID conversion.
graphType-methods       graphType
hyperGTestCC            Hypergeometric testing with false discovery
                        rate
listNames               listNames
mergeLists-methods      Function 'mergeLists' in Package
                        'categoryCompare'
mergedData-class        Class '"mergedData"'
minCount                minCount
minNodes                Delete nodes with less than a certain number of
                        genes annotated
pvalueType              Type of p-values to return from object
resetColors-methods     resetColors
show-methods            Methods for Function show in Package
                        'categoryCompare'
