bambu                   long read isoform reconstruction and
                        quantification
compareTranscripts      compare alternatively-spliced transcripts
plotBambu               plot.bambu
prepareAnnotations      prepare reference annotations for long read
                        RNA-Seq analysis with Bambu
readFromGTF             convert a GTF file into a GRangesList
trainBambu              Function to train a model for use on other data
transcriptToGeneExpression
                        transcript to gene expression
writeBambuOutput        Write Bambu results to GTF and
                        transcript/gene-count files
writeToGTF              write GRangeslist into GTF file
