# Generated by roxygen2: do not edit by hand

export(add1KG2SampleGDS)
export(addBlockFromDetFile)
export(addGeneBlockGDSRefAnnot)
export(addGeneBlockRefAnnot)
export(addRef2GDS1KG)
export(addStudy1Kg)
export(computeAncestryFromSynthetic)
export(computeAncestryFromSyntheticFile)
export(computeKNNRefSample)
export(computeKNNRefSynthetic)
export(computePCAMultiSynthetic)
export(computePCARefSample)
export(computePoolSyntheticAncestryGr)
export(computeSyntheticROC)
export(createAUROCGraph)
export(createAccuracyGraph)
export(createStudy2GDS1KG)
export(estimateAllelicFraction)
export(generateGDS1KG)
export(generateMapSnvSel)
export(generatePhase1KG2GDS)
export(generatePhaseRef)
export(getRef1KGPop)
export(getRefSuperPop)
export(groupChr1KGSNV)
export(identifyRelative)
export(identifyRelativeRef)
export(inferAncestry)
export(inferAncestryDNA)
export(inferAncestryGeneAware)
export(prepPed1KG)
export(prepSynthetic)
export(pruningSample)
export(runExomeAncestry)
export(runRNAAncestry)
export(select1KGPop)
export(select1KGPopForSynthetic)
export(snvListVCF)
export(splitSelectByPop)
export(syntheticGeno)
importFrom(AnnotationDbi,select)
importFrom(AnnotationFilter,GeneIdFilter)
importFrom(BSgenome,strand)
importFrom(GENESIS,pcairPartition)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,reduce)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(GenomicRanges,width)
importFrom(IRanges,IRanges)
importFrom(MatrixGenerics,rowRanges)
importFrom(Rsamtools,BamFile)
importFrom(Rsamtools,PileupParam)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,pileup)
importFrom(S4Vectors,Rle)
importFrom(S4Vectors,aggregate)
importFrom(S4Vectors,isSingleNumber)
importFrom(S4Vectors,isSingleString)
importFrom(SNPRelate,snpgdsIBDKING)
importFrom(SNPRelate,snpgdsLDpruning)
importFrom(SNPRelate,snpgdsOpen)
importFrom(SNPRelate,snpgdsPCA)
importFrom(SNPRelate,snpgdsPCASNPLoading)
importFrom(SNPRelate,snpgdsPCASampLoading)
importFrom(VariantAnnotation,geno)
importFrom(VariantAnnotation,readVcf)
importFrom(class,knn)
importFrom(dplyr,"%>%")
importFrom(dplyr,group_by)
importFrom(dplyr,summarize)
importFrom(ensembldb,exonsBy)
importFrom(ensembldb,genes)
importFrom(ensembldb,toSAF)
importFrom(gdsfmt,add.gdsn)
importFrom(gdsfmt,append.gdsn)
importFrom(gdsfmt,closefn.gds)
importFrom(gdsfmt,compression.gdsn)
importFrom(gdsfmt,createfn.gds)
importFrom(gdsfmt,delete.gdsn)
importFrom(gdsfmt,index.gdsn)
importFrom(gdsfmt,ls.gdsn)
importFrom(gdsfmt,objdesp.gdsn)
importFrom(gdsfmt,openfn.gds)
importFrom(gdsfmt,put.attr.gdsn)
importFrom(gdsfmt,read.gdsn)
importFrom(gdsfmt,readmode.gdsn)
importFrom(gdsfmt,sync.gds)
importFrom(gdsfmt,write.gdsn)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_ribbon)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(methods,is)
importFrom(pROC,multiclass.roc)
importFrom(pROC,roc)
importFrom(rlang,.data)
importFrom(rlang,arg_match)
importFrom(stats,dbinom)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,pbinom)
importFrom(stats,qbinom)
importFrom(stats,quantile)
importFrom(stats,rmultinom)
importFrom(stringr,str_detect)
importFrom(utils,read.csv)
importFrom(utils,read.csv2)
importFrom(utils,read.delim)
importFrom(utils,write.csv)
importFrom(utils,write.csv2)
importFrom(utils,write.table)
