R4RNA-package           An R package for RNA visualization and analysis
as.helix                Coerce to a Helix Data Frame
baseConservation        Compute statistics for a multiple sequence
                        alignments
basepairFrequency       Calculates the frequency of each basepair
blankPlot               Create a blank plotting canvas
colourByCount           Assign colours to helices
expandHelix             Expand or collapse helices to and from
                        basepairs
helix                   Helices predicted by TRANSAT with p-values
isConflictingHelix      Logical filters of helix by type
logseq                  Log base 10 sequence, floor and ceiling
plotCovariance          Plot nucleotide sequence coloured by covariance
plotHelix               Plots helices in arc diagram
readHelix               Read secondary structure file
structureMismatchScore
                        Scores how a basepair structure fits a sequence
unknottedGroups         Partition basepairs into unknotted groups
viennaToHelix           Convert helix structures to and from other
                        formats
writeHelix              Write out a helix data frame into a text file
