CTCF_ChIP_peaks         Example ChIP-seq peak file
CTCF_TIP_peaks          Example TIP-seq peak file
MotifPeeker             Benchmark epigenomic profiling methods using
                        motif enrichment
calc_frip               Calculate FRiP score
check_ENCODE            Check for ENCODE input
check_JASPAR            Check for JASPAR input
check_genome_build      Check genome build
denovo_motifs           Discover motifs in sequences
find_motifs             Find similar motifs
get_JASPARCORE          Download JASPAR CORE database
get_df_distances        Get dataframe with motif-summit distances
get_df_enrichment       Get dataframe with motif enrichment values
motif_MA1102.3          Example CTCFL JASPAR motif file
motif_MA1930.2          Example CTCF JASPAR motif file
motif_enrichment        Calculate motif enrichment in a set of
                        sequences
motif_similarity        Compare motifs from segregated sequences
read_motif_file         Read a motif file
read_peak_file          Read MACS2/3 narrowPeak or SEACR BED peak file
save_peak_file          Minimally save a peak object to a file (BED4)
segregate_seqs          Segregate input sequences into common and
                        unique groups
summit_to_motif         Calculate the distance between peak summits and
                        motifs
