Segmentation of Bis-seq data

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Documentation for package ‘MethylSeekR’ version 1.49.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

MethylSeekR-package	Segmentation of Bis-seq methylation data
calculateFDRs	Determine false discovery rate
MethylSeekR	Segmentation of Bis-seq methylation data
plotAlphaDistributionOneChr	Calculate and plot alpha distribution.
plotFinalSegmentation	Plotting final segmentation
plotPMDSegmentation	Plotting the PMD Segmentation
readMethylome	Load Bis-seq data
readSNPTable	Load SNP table
removeSNPs	Remove CpGs overlapping SNPs
savePMDSegments	Save PMD segments
saveUMRLMRSegments	Save UMR and LMR segments
segmentPMDs	PMD segmenter
segmentUMRsLMRs	Identify UMRs and LMRs