GeneCodon               Optimizing the codon usage of gene by replacing
                        less usage codons with the most preference used
                        codons or replacing the most preference used
                        codons with less usage codons.
GeneFoldGA              the function optimizes gene merely considering
                        mRNA secondary structure.
GeneFoldGA-class        Class "GeneFoldGA"
GeneGA                  the function optimizes gene expression based on
                        both mRNA secondary structure and codon usage
                        bias
GeneGA-class            Class "GeneGA"
GeneGA-package          Designing gene based on mRNA secondary
                        structure and codon usage bias using Genetic
                        algorithm, GeneGA includes the information of
                        highly expressed genes of almost 200 genomes.
plotGeneGA-methods      plotGeneGA methods of GeneGA and GeneFoldGA
                        objects
wSet                    Codon Adaptation Index (CAI) w tables
