GeneBreak-package	GeneBreak
accessOptions	accessOptions-CopyNumberBreakPoints-method
accessOptions,CopyNumberBreakPoints-method	accessOptions-CopyNumberBreakPoints-method
addGeneAnnotation	addGeneAnnotation-CopyNumberBreakPoints-method
addGeneAnnotation,CopyNumberBreakPoints-method	addGeneAnnotation-CopyNumberBreakPoints-method
bpFilter	bpFilter-CopyNumberBreakPoints-method
bpFilter,CopyNumberBreakPoints-method	bpFilter-CopyNumberBreakPoints-method
bpGenes	bpGenes-CopyNumberBreakPointGenes-method
bpGenes,CopyNumberBreakPointGenes-method	bpGenes-CopyNumberBreakPointGenes-method
bpPlot	bpPlot-CopyNumberBreakPoints-method
bpPlot,CopyNumberBreakPoints-method	bpPlot-CopyNumberBreakPoints-method
bpStats	bpStats-CopyNumberBreakPoints-method
bpStats,CopyNumberBreakPoints-method	bpStats-CopyNumberBreakPoints-method
breakpointData	breakpointData-CopyNumberBreakPoints-method
breakpointData,CopyNumberBreakPoints-method	breakpointData-CopyNumberBreakPoints-method
breakpointsPerGene	breakpointsPerGene-CopyNumberBreakPointGenes-method
breakpointsPerGene,CopyNumberBreakPointGenes-method	breakpointsPerGene-CopyNumberBreakPointGenes-method
callData	callData-CopyNumberBreakPoints-method
callData,CopyNumberBreakPoints-method	callData-CopyNumberBreakPoints-method
copynumber.data.chr18	copynumber.data.chr18
copynumber.data.chr20	copynumber.data.chr20
copynumber.data.chr21	copynumber.data.chr21
CopyNumberBreakPointGenes	CopyNumberBreakPointGenes-class
CopyNumberBreakPointGenes-class	CopyNumberBreakPointGenes-class
CopyNumberBreakPoints	CopyNumberBreakPoints-class
CopyNumberBreakPoints-class	CopyNumberBreakPoints-class
ens.gene.ann.hg18	ens.gene.ann.hg18
ens.gene.ann.hg19	ens.gene.ann.hg19
ens.gene.ann.hg38	ens.gene.ann.hg38
featureChromosomes	featureChromosomes-CopyNumberBreakPoints-method
featureChromosomes,CopyNumberBreakPoints-method	featureChromosomes-CopyNumberBreakPoints-method
featureInfo	featureInfo-CopyNumberBreakPoints-method
featureInfo,CopyNumberBreakPoints-method	featureInfo-CopyNumberBreakPoints-method
featuresPerGene	featuresPerGene-CopyNumberBreakPointGenes-method
featuresPerGene,CopyNumberBreakPointGenes-method	featuresPerGene-CopyNumberBreakPointGenes-method
GeneBreak	GeneBreak
geneChromosomes	geneChromosomes-CopyNumberBreakPointGenes-method
geneChromosomes,CopyNumberBreakPointGenes-method	geneChromosomes-CopyNumberBreakPointGenes-method
geneInfo	geneInfo-CopyNumberBreakPointGenes-method
geneInfo,CopyNumberBreakPointGenes-method	geneInfo-CopyNumberBreakPointGenes-method
getBreakpoints	getBreakpoints
namesFeatures	namesFeatures-CopyNumberBreakPoints-method
namesFeatures,CopyNumberBreakPoints-method	namesFeatures-CopyNumberBreakPoints-method
recurrentGenes	recurrentGenes-CopyNumberBreakPointGenes-method
recurrentGenes,CopyNumberBreakPointGenes-method	recurrentGenes-CopyNumberBreakPointGenes-method
sampleNames	sampleNames-CopyNumberBreakPoints-method
sampleNames,CopyNumberBreakPoints-method	sampleNames-CopyNumberBreakPoints-method
segmentData	segmentData-CopyNumberBreakPoints-method
segmentData,CopyNumberBreakPoints-method	segmentData-CopyNumberBreakPoints-method
