# Generated by roxygen2: do not edit by hand

export(ClusterProbes)
export(EpiMix)
export(EpiMix_PlotGene)
export(EpiMix_PlotModel)
export(EpiMix_PlotProbe)
export(EpiMix_PlotSurvival)
export(EpiMix_getInfiniumAnnotation)
export(GEO_Download_DNAMethylation)
export(GEO_Download_GeneExpression)
export(GetSurvivalProbe)
export(Preprocess_DNAMethylation)
export(Preprocess_GeneExpression)
export(TCGA_Download_DNAmethylation)
export(TCGA_Download_GeneExpression)
export(TCGA_GetData)
export(TCGA_GetSampleInfo)
export(TCGA_Preprocess_DNAmethylation)
export(TCGA_Preprocess_GeneExpression)
export(find_miRNA_targets)
export(functionEnrich)
import(ELMER.data)
import(EpiMix.data)
import(Seqinfo)
import(GenomicRanges)
import(doParallel)
import(doSNOW)
import(ggplot2)
importFrom(AnnotationHub,query)
importFrom(Biobase,exprs)
importFrom(Biobase,pData)
importFrom(Biobase,phenoData)
importFrom(ExperimentHub,ExperimentHub)
importFrom(GenomicFeatures,transcripts)
importFrom(GenomicRanges,"strand<-")
importFrom(GenomicRanges,distance)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,follow)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,nearest)
importFrom(GenomicRanges,precede)
importFrom(GenomicRanges,promoters)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(GenomicRanges,strand)
importFrom(IRanges,findOverlaps)
importFrom(RColorBrewer,brewer.pal)
importFrom(RCurl,getURL)
importFrom(RPMM,betaObjf)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(SummarizedExperiment,rowRanges)
importFrom(biomaRt,getBM)
importFrom(biomaRt,useDataset)
importFrom(biomaRt,useEnsembl)
importFrom(doParallel,registerDoParallel)
importFrom(downloader,download)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,distinct)
importFrom(dplyr,do)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,group_by_)
importFrom(dplyr,if_else)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,slice)
importFrom(dplyr,summarize)
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,title)
importFrom(methods,as)
importFrom(methods,is)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(plyr,alply)
importFrom(progress,progress_bar)
importFrom(rlang,.data)
importFrom(stats,anova)
importFrom(stats,aov)
importFrom(stats,as.dist)
importFrom(stats,coef)
importFrom(stats,confint)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,dbeta)
importFrom(stats,density)
importFrom(stats,dnorm)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,optim)
importFrom(stats,p.adjust)
importFrom(stats,pchisq)
importFrom(stats,prcomp)
importFrom(stats,qqline)
importFrom(stats,qqnorm)
importFrom(stats,qqplot)
importFrom(stats,quantile)
importFrom(stats,rgamma)
importFrom(stats,t.test)
importFrom(stats,var)
importFrom(stats,wilcox.test)
importFrom(tibble,as_tibble)
importFrom(tidyr,separate_rows)
importFrom(utils,data)
importFrom(utils,download.file)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,setTxtProgressBar)
importFrom(utils,tail)
importFrom(utils,txtProgressBar)
importFrom(utils,untar)
importFrom(utils,write.csv)
importFrom(utils,write.table)
