DNEA-package	DNEA-package
addExpressionData	addExpressionData
adjacencyGraph	adjacencyGraph-methods
adjacencyGraph,consensusClusteringResults-method	adjacencyGraph-methods
adjacencyGraph,DNEA-method	adjacencyGraph-methods
adjacencyMatrix	adjacencyMatrix-methods
adjacencyMatrix,DNEA-method	adjacencyMatrix-methods
aggregateFeatures	aggregateFeatures
BICscores	BICscores-methods
BICscores,DNEA-method	BICscores-methods
BICscores<-	BICscores-methods
BICscores<-,DNEA-method	BICscores-methods
BICtune	BICtune-methods
BICtune,DNEA-method	BICtune-methods
BICtune,matrix-method	BICtune-methods
CCsummary	CCsummary-methods
CCsummary,DNEA-method	CCsummary-methods
clusterNet	clusterNet
collapsed_DNEA	collapsed_DNEA-class
collapsed_DNEA-class	collapsed_DNEA-class
consensusClusteringResults	consensusClusteringResults-class
consensusClusteringResults-class	consensusClusteringResults-class
createDNEAobject	createDNEAobject
datasetSummary	datasetSummary-methods
datasetSummary,DNEA-method	datasetSummary-methods
diagnostics	diagnostics-methods
diagnostics,DNEA-method	diagnostics-methods
diagnostics,DNEAinputSummary-method	diagnostics-methods
DNEA	DNEA-package
DNEA-class	DNEA-class
DNEAinputSummary	DNEAinputSummary-class
DNEAinputSummary-class	DNEAinputSummary-class
dnw	dnw
edgeList	edgeList-methods
edgeList,DNEA-method	edgeList-methods
edgeList<-	edgeList-methods
edgeList<-,DNEA-method	edgeList-methods
expressionData	expressionData-methods
expressionData,DNEA-method	expressionData-methods
featureNames	featureNames-methods
featureNames,DNEA-method	featureNames-methods
filterNetworks	filterNetworks-methods
filterNetworks,DNEA-method	filterNetworks-methods
filterNetworks,list-method	filterNetworks-methods
getNetworkFiles	getNetworkFiles
getNetworks	getNetworks
includeMetadata	includeMetadata
lambdas2Test	lambdas2Test-methods
lambdas2Test,DNEA-method	lambdas2Test-methods
massDataset2DNEA	massDataset2DNEA
metab_data	metab_data
metaData	metaData-methods
metaData,DNEA-method	metaData-methods
netGSAresults	netGSAresults-methods
netGSAresults,DNEA-method	netGSAresults-methods
networkGroupIDs	networkGroupIDs-methods
networkGroupIDs,DNEA-method	networkGroupIDs-methods
networkGroupIDs<-	networkGroupIDs-methods
networkGroups	networkGroups-methods
networkGroups,DNEA-method	networkGroups-methods
nodeList	nodeList-methods
nodeList,DNEA-method	nodeList-methods
nodeList<-	nodeList-methods
nodeList<-,DNEA-method	nodeList-methods
numFeatures	numFeatures-methods
numFeatures,DNEA-method	numFeatures-methods
numFeatures,DNEAinputSummary-method	numFeatures-methods
numSamples	numSamples-methods
numSamples,DNEA-method	numSamples-methods
numSamples,DNEAinputSummary-method	numSamples-methods
optimizedLambda	optimizedLambda-methods
optimizedLambda,DNEA-method	optimizedLambda-methods
optimizedLambda<-	optimizedLambda-methods
optimizedLambda<-,DNEA-method	optimizedLambda-methods
plotNetworks	plotNetworks
projectName	projectName-methods
projectName,DNEA-method	projectName-methods
runNetGSA	runNetGSA
sampleNames	sampleNames-methods
sampleNames,DNEA-method	sampleNames-methods
selectionProbabilities	selectionProbabilities-methods
selectionProbabilities,DNEA-method	selectionProbabilities-methods
selectionResults	selectionResults-methods
selectionResults,DNEA-method	selectionResults-methods
show,DNEA-method	DNEA-class
show,DNEAinputSummary-method	DNEAinputSummary-class
stabilitySelection	stabilitySelection
subnetworkMembership	subnetworkMembership-methods
subnetworkMembership,consensusClusteringResults-method	subnetworkMembership-methods
subnetworkMembership,DNEA-method	subnetworkMembership-methods
sumExp2DNEA	sumExp2DNEA
T1Dmeta	T1Dmeta
TEDDY	TEDDY
