CoverageBamFile-class   Class '"CoverageBamFile"'
CoverageBigWigFile-class
                        Class '"CoverageBigWigFile"'
CoverageView-package    Coverage visualization package for R
DF_H3K36me3             Example of a coverage matrix using the ChIP-seq
                        data for the H3K36me3 histone modification
                        experiment
DF_H3K36me3_control     Example of a coverage matrix using the control
                        replicate for the ChIP-seq data for the
                        H3K36me3 histone modification experiment
DF_H3K4me3              Example of a coverage matrix using the ChIP-seq
                        data for the H3K4me3 histone modification
                        experiment
DF_H3K4me3_ctl          Example of a coverage matrix using the control
                        replicate for the ChIP-seq data for the H3K4me3
                        histone modification experiment
DF_H3K4me3_nopeaks_ratios
                        Example of a matrix with the ratio of the
                        coverages using the ChIP-seq data for the
                        H3K4me3 histone modification experiment
FoxA1_chr19             Example of a coverage matrix using the ChIP-seq
                        data for the FoxA1 transcription factor
                        experiment
cov.interval            arithmetic operation on an interval
cov.matrix              Compute a coverage matrix
draw.heatmap            Draw a coverage heatmap
draw.profile            Draw a coverage profile
export.wig              Generates a WIG file containing the coverage
                        values for a certain genomic interval
genome.covplot.cumdepth
                        Generates a cumulative genome coverage plot
genome.covplot.depth    Generates a genome coverage plot
write.profile           Write coverage values into a file
