addCDS                  Add CDS to rowRanges of a transcript-level
                        SummarizedExperiment
addExons                Add exons to rowRanges of a transcript-level
                        SummarizedExperiment
addIds                  Add IDs to rowRanges of a SummarizedExperiment
getTximetaBFC           Get or set the directory of the BiocFileCache
                        used by tximeta
importData              Import quantification across mixed reference
                        transcripts
inspectDigests          Inspect digest matches from 'importData()'
                        imported data
linkedTxome             Make and load linked transcriptomes (linked GTF
                        and FASTA)
linkedTxpData           Make linked transcript data (linked GRanges)
makeDGEList             Make a DGEList from tximeta output
retrieveCDNA            Retrieve the cDNA transcript sequence for a
                        SummarizedExperiment
retrieveDb              Retrieve the TxDb or EnsDb associated with a
                        SummarizedExperiment
splitSE                 Split SummarizedExperiment by gene categories
summarizeToGene,SummarizedExperiment-method
                        Summarize estimated quantitites to gene-level
tximeta                 Import transcript quantification with metadata
tximeta-package         Import transcript quantification with metadata
updateMetadata          Update transcript metadatda for 'importData()'
                        imported data
