| bind |
Produces a dataframe showing L-function metric for each imageID entry. |
| colTest |
Perform a simple wilcoxon-rank-sum test or t-test on the columns of a data frame |
| convPairs |
Converts colPairs object into an abundance matrix based on number of nearby interactions for every cell type. |
| diabetesData |
Diabetes IMC data in SCE format. |
| getPairwise |
Get statistic from pairwise L curve of a single image. |
| getProp |
Get proportions from a SummarizedExperiment. |
| imageCrossPlot |
Pairwise cross-plot of spatial associations |
| plotImage |
Plots an image with specified from and to cell types. |
| signifPlot |
Plots result of signifPlot. |
| spicy |
Performs spatial tests on spatial cytometry data. |
| spicy-method |
Performs spatial tests on spatial cytometry data. |
| spicyBoxPlot |
Plots boxplot for a specified cell-cell relationship |
| SpicyResults-class |
Performs spatial tests on spatial cytometry data. |
| SpicyResults-method |
Performs spatial tests on spatial cytometry data. |
| spicyTest |
Results from spicy for diabetesData |
| survBubble |
Plots survival results from spicy. |
| topPairs |
A table of the significant results from spicy tests |
| topPairs-method |
A table of the significant results from spicy tests |
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