A Tool for Spatial Multi-sample Comparisons

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Documentation for package ‘spatialFDA’ version 1.1.15

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

.dfToppp	Convert SpatialExperiment object to ppp object
.extractMetric	Compute a spatial metric on a SpatialExperiment object
.loadExample	load Example dataset from Damond et al. (2019)
.speToDf	Transform a SpatialExperiment into a dataframe
calcCrossMetricPerFov	Calculate cross spatial metrics for all combinations per FOV
calcMetricPerFov	Calculate a spatial metric on a 'SpatialExperiment' object per field of view
crossSpatialInference	Function for Cross Spatial Inference
extractCrossInferenceData	Reshaping the Result of a Cross Spatial Inference to a Dataframe
functionalGam	General additive model with functional response
functionalPCA	Functional Principal Component Analysis
plotCrossFOV	Creates a nXn plot of the cross metrics per sample
plotCrossHeatmap	Plotting the Result of a Cross Spatial Inference
plotCrossMetricPerFov	Plot a cross type spatial metric per field of view
plotFbPlot	Functional boxplot of spatstat curves
plotFpca	Plot a biplot from an fPCA analysis
plotMdl	Plot a pffr model object
plotMetricPerFov	Plot a spatial metric per field of view
prepData	Prepare data from calcMetricRes to be in the right format for FDA
print.fpca	print the fPCA results
spatialInference	Statistical Inference on Spatial Statistics Functions