generateNull            Permutation test for the derived scores of each
                        sample
getPvals                Estimate the empirical p-values
getStableGenes          Get a list of stably expressed genes
multiScore              single-sample gene-set scoring method for
                        multiple signatures
plotDispersion          Plot the score v.s. despersion for all samples
plotNull                Plot the empirically estimated null
                        distribution and associated p-values
plotRankDensity         Plot the densities of ranks for one sample
plotScoreLandscape      Plot landscape of two gene signatures scores
projectScoreLandscape   Project data on the landscape plot obtained
                        from 'plotScoreLandscape()'
rankGenes               Rank genes by the gene expression intensities
scoredf_ccle_epi        Pre-computed scores of the CCLE dataset against
                        an epithelial gene signature
scoredf_ccle_mes        Pre-computed scores of the CCLE dataset against
                        a mesenchymal gene signature
scoredf_tcga_epi        Pre-computed scores of the TCGA breast cancer
                        gene expression matrix against an epithelial
                        signature
scoredf_tcga_mes        Pre-computed scores of the TCGA breast cancer
                        gene expression matrix against a mesenchymal
                        signature
simpleScore             single-sample gene-set scoring method
singscore               singscore: A package for deriving gene-set
                        scores at a single sample level
tgfb_expr_10_se         An example gene expression dataset
tgfb_gs_dn              Gene set of down-regulated genes for the
                        TGFb-induced EMT gene signature
tgfb_gs_up              Gene set of up-regulated genes for the
                        TGFb-induced EMT gene signature
toy_expr_se             A toy gene expression dataset of two samples
toy_gs_dn               A gene set object of down-regulated genes for
                        the toy dataset
toy_gs_up               A gene set object of up-regulated genes for the
                        toy dataset
