A single-cell RNAseq Shiny app-package

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Documentation for package ‘scRNAseqApp’ version 1.9.26

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

$-method	The methods for APPconf-class
$<--method	The methods for APPconf-class
APPconf	Class '"APPconf"'
APPconf-class	Class '"APPconf"'
APPconf-methods	The methods for APPconf-class
as.character-method	The methods for APPconf-class
as.list-method	The methods for APPconf-class
availableThemes	Available themes of color sets
createAppConfig	Create a metadata to describe the dataset
createDataSet	Create a dataset Create a dataset from a Seurat object. The function will try to find the markers in the Misc data named as 'markers'. The misc data should be output of function 'FindAllMarkers'.
createSeuFromCellRanger	load data from cellRanger
createSeuFromMatrix	load data from a count matrix
extractFragmentNameMapList	Extract fragment name map
lapply-method	The methods for APPconf-class
markers	The methods for APPconf-class
markers-method	The methods for APPconf-class
scInit	Create a scRNAseqApp project
scRNAseqApp	scRNAseqApp main function
show-method	The methods for APPconf-class
unlist-method	The methods for APPconf-class
[-method	The methods for APPconf-class
[[-method	The methods for APPconf-class
[[<--method	The methods for APPconf-class