# Generated by roxygen2: do not edit by hand

export(TI_fit)
export(TUgether)
export(apply_Ttest_delay)
export(apply_ancova)
export(apply_event_position)
export(apply_manova)
export(apply_t_test)
export(apply_t_test_ti)
export(check_input)
export(dataframe_summary)
export(dataframe_summary_TI)
export(dataframe_summary_events)
export(dataframe_summary_events_HL_int)
export(dataframe_summary_events_ps_itss)
export(dataframe_summary_events_velocity)
export(event_dataframe)
export(finding_PDD)
export(finding_TI)
export(fold_change)
export(fragment_HL)
export(fragment_TI)
export(fragment_delay)
export(fragment_inty)
export(gff3_preprocess)
export(make_df)
export(make_pen)
export(nls2_fit)
export(predict_ps_itss)
export(rifi_fit)
export(rifi_fragmentation)
export(rifi_penalties)
export(rifi_preprocess)
export(rifi_stats)
export(rifi_summary)
export(rifi_visualization)
export(rifi_wrapper)
export(segment_pos)
export(viz_pen_obj)
import(SummarizedExperiment)
import(dplyr)
import(ggplot2)
import(reshape2)
import(scales)
importFrom(S4Vectors,decode)
importFrom(S4Vectors,metadata)
importFrom(car,Anova)
importFrom(cowplot,background_grid)
importFrom(doMC,registerDoMC)
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,pdf.options)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,curve)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,text)
importFrom(grid,arrow)
importFrom(grid,gpar)
importFrom(grid,textGrob)
importFrom(grid,unit)
importFrom(methods,is)
importFrom(nls2,nls2)
importFrom(nnet,which.is.max)
importFrom(parallel,mclapply)
importFrom(rlang,.data)
importFrom(rlang,is_empty)
importFrom(rtracklayer,readGFF)
importFrom(stats,coef)
importFrom(stats,deviance)
importFrom(stats,lm)
importFrom(stats,manova)
importFrom(stats,na.omit)
importFrom(stats,nls)
importFrom(stats,p.adjust)
importFrom(stats,quantile)
importFrom(stats,residuals)
importFrom(stats,sd)
importFrom(stats,t.test)
importFrom(stats,var)
importFrom(stringr,str_extract)
importFrom(stringr,str_split)
importFrom(tibble,add_row)
importFrom(utils,capture.output)
importFrom(utils,read.delim2)
importFrom(utils,write.table)
