DEqual                  Differential expression quality (DEqual) plot
degradation_tstats      Degradation time t-statistics
getDegTx                Obtain expression matrix for degraded
                        transcripts
getPCs                  PCs from transcripts
get_qsvs                Generate matrix of qsvs
k_qsvs                  Apply num.sv algorithm to determine the number
                        of pcs to be included
normalize_tx_names      Remove version number from Gencode/Ensembl
                        transcript names
qSVA                    A wrapper function used to perform qSVA in one
                        step.
rse_tx                  Example of RSE object with RNA-seq transcript
                        quantification data
select_transcripts      Select transcripts associated with degradation
transcripts             Transcripts for Degradation Models
which_tx_names          Check validity of transcript vectors and return
                        a vector matching indexes in tx1
