Package: proBAMr
Type: Package
Title: Generating SAM file for PSMs in shotgun proteomics data
Version: 1.44.0
Date: 2025-04-30
Author: Xiaojing Wang
Maintainer: Xiaojing Wang <xiaojing.wang@vanderbilt.edu>
Description: Mapping PSMs back to genome. The package builds SAM file
        from shotgun proteomics data The package also provides function
        to prepare annotation from GTF file.
License: Artistic-2.0
Depends: R (>= 3.0.1), IRanges, AnnotationDbi
Imports: GenomicRanges, Biostrings, GenomicFeatures, txdbmaker,
        rtracklayer
Suggests: GenomeInfoDbData, RUnit, BiocGenerics
biocViews: ImmunoOncology, Proteomics, MassSpectrometry, Software,
        Visualization
NeedsCompilation: no
git_url: https://git.bioconductor.org/packages/proBAMr
git_branch: RELEASE_3_22
git_last_commit: 90383eb
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
Packaged: 2025-10-30 03:49:32 UTC; biocbuild
Built: R 4.5.1; ; 2025-10-30 09:35:58 UTC; unix
