pipeComp-package	pipeComp-package
$,PipelineDefinition-method	PipelineDefinition-methods
addPipelineStep	addPipelineStep
aggregatePipelineResults	aggregatePipelineResults
arguments	PipelineDefinition-methods
arguments,PipelineDefinition-method	PipelineDefinition-methods
as.list,PipelineDefinition-method	PipelineDefinition-methods
buildCombMatrix	buildCombMatrix
checkPipelinePackages	checkPipelinePackages
clustMetricsCorr	clustMetricsCorr
colCenterScale	colCenterScale
ctrlgenes	ctrlgenes
dea_evalPlot_curve	dea_evalPlot_curve
dea_pipeline	dea_pipeline
defaultArguments	PipelineDefinition-methods
defaultArguments,PipelineDefinition-method	PipelineDefinition-methods
defaultArguments<-	PipelineDefinition-methods
defaultArguments<-,PipelineDefinition-method	PipelineDefinition-methods
defaultStepAggregation	defaultStepAggregation
evalHeatmap	evalHeatmap
evaluateClustering	evaluateClustering
evaluateDEA	evaluateDEA
evaluateDimRed	evaluateDimRed
evaluateNorm	evaluateNorm
exampleDEAresults	exampleDEAresults
exampleResults	exampleResults
farthestPoint	farthestPoint
getDimensionality	getDimensionality
getQualitativePalette	getQualitativePalette
length,PipelineDefinition-method	PipelineDefinition-methods
match_evaluate_multiple	match_evaluate_multiple
mergePipelineResults	mergePipelineResults
mockPipeline	mockPipeline
names,PipelineDefinition-method	PipelineDefinition-methods
names<-,PipelineDefinition-method	PipelineDefinition-methods
parsePipNames	parsePipNames
pipeComp	pipeComp-package
PipelineDefinition	PipelineDefinition
PipelineDefinition-class	PipelineDefinition
PipelineDefinition-method	PipelineDefinition-methods
PipelineDefinition-methods	PipelineDefinition-methods
plotElapsed	plotElapsed
readPipelineResults	readPipelineResults
runPipeline	runPipeline
scrna_describeDatasets	scrna_describeDatasets
scrna_evalPlot_filtering	scrna_evalPlot_filtering
scrna_evalPlot_overall	scrna_evalPlot_overall
scrna_evalPlot_silh	scrna_evalPlot_silh
scrna_pipeline	scrna_pipeline
show,PipelineDefinition-method	PipelineDefinition-methods
stableG	stableG
stepFn	PipelineDefinition-methods
stepFn,PipelineDefinition-method	PipelineDefinition-methods
stepFn<-	PipelineDefinition-methods
stepFn<-,PipelineDefinition-method	PipelineDefinition-methods
[,PipelineDefinition,ANY,ANY,ANY-method	PipelineDefinition-methods
