manhattan_plot          Manhattan plot
mz_rt_plot              Plot m/z vs retention time plot (cloud plot)
plot_dendrogram         Sample dendrogram
plot_dist_density       Plot distance density
plot_effect_heatmap     Heatmap of effects between variables, such as
                        correlations
plot_injection_lm       Estimate the magnitude of drift
plot_p_histogram        Histogram of p-values
plot_pca                PCA scatter plot
plot_pca_arrows         PCA plot with arrows
plot_pca_hexbin         PCA hexbin plot
plot_pca_loadings       PCA loadings plot
plot_quality            Plot quality metrics
plot_sample_boxplots    Plot a boxplot for each sample
plot_sample_heatmap     Sample heatmap
plot_tsne               t-SNE scatter plot
plot_tsne_arrows        t-SNE plot with arrows
plot_tsne_hexbin        t-SNE hexbin plot
save_QC_plots           Write all relevant pretreatment visualizations
                        to pdf
save_batch_plots        Save batch correction plots
save_beeswarm_plots     Save beeswarm plots of each feature by group
save_dc_plots           Save drift correction plots
save_group_boxplots     Save box plots of each feature by group
save_group_lineplots    Save line plots with errorbars by group
save_plot               Save plot to chosen format
save_scatter_plots      Save scatter plots of each feature against a
                        set variable
save_subject_line_plots
                        Save line plots with mean
visualize_clusters      Visualize clusters of features
volcano_plot            Volcano plot
