Single-cell Immune Repertoire Trajectory Analysis in R

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Documentation for package ‘dandelionR’ version 1.1.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

demo_airr	Example AIRR Dataset for V(D)J Analysis
demo_sce	Example SCE Dataset that does not contain V(D)J information
differentiationProbabilities	Compute Branch Probabilities Using Markov Chain
markovProbability	Markov Chain Construction and Probability Calculation
miloUmap	Perform UMAP on the Adjacency Matrix of a Milo Object
projectProbability	Project Probabilities from Markov Chain to Pseudobulks
projectPseudotimeToCell	Project Pseudotime and Branch Probabilities to Single Cells
project_single_value	Function to project pseudobulk-level values to single-cell level
sce_vdj	Example Dataset for V(D)J Analysis
setupVdjPseudobulk	Preprocess V(D)J Data for Pseudobulk Analysis
vdjPseudobulk	Generate Pseudobulk V(D)J Feature Space