Package: consensusDE
Type: Package
Title: RNA-seq analysis using multiple algorithms
Version: 1.28.0
Authors@R: c(person("Ashley J.", "Waardenberg", email = "a.waardenberg@gmail.com", 
    role = c("aut", "cre")), person("Martha M.", "Cooper", email = "marthacooper92@gmail.com", 
    role = c("ctb")))
Description: This package allows users to perform DE analysis using multiple 
    algorithms. It seeks consensus from multiple methods. Currently it supports 
    "Voom", "EdgeR" and "DESeq". It uses RUV-seq (optional) to remove unwanted 
    sources of variation.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 6.1.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: Transcriptomics, MultipleComparison, Clustering, Sequencing,
        Software
Depends: R (>= 3.5), BiocGenerics
Imports: airway, AnnotationDbi, BiocParallel, Biobase, Biostrings,
        data.table, dendextend, DESeq2 (>= 1.20.0), EDASeq, ensembldb,
        edgeR, EnsDb.Hsapiens.v86, GenomicAlignments, GenomicFeatures,
        limma, org.Hs.eg.db, pcaMethods, RColorBrewer, Rsamtools,
        RUVSeq, S4Vectors, stats, SummarizedExperiment,
        TxDb.Dmelanogaster.UCSC.dm3.ensGene, utils
git_url: https://git.bioconductor.org/packages/consensusDE
git_branch: RELEASE_3_22
git_last_commit: 7c6b138
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 02:23:42 UTC; biocbuild
Author: Ashley J. Waardenberg [aut, cre],
  Martha M. Cooper [ctb]
Maintainer: Ashley J. Waardenberg <a.waardenberg@gmail.com>
Built: R 4.5.1; ; 2025-10-30 09:20:28 UTC; unix
