TTMap-package           Two-Tier Mapper: a clustering tool based on
                        topological data analysis
calcul_e                Calculation of the value of epsilon
control_adjustment      Calculates a corrected control group, discovers
                        outliers in it.
generate_correlation    Generates different distance matrices
hyperrectangle_deviation_assessment
                        Calculation of deviation components
make_matrices           Prepares the matrices for 'control_adjustment'
make_matrices-methods   Prepares the matrices for 'control_adjustment'
ttmap                   Visualisation of the clustering
ttmap_sgn_genes         Gives a list of associated genes per cluster
write_pcl               Reading, writing and annotation files
