SpatialDecon-package    SpatialDecon: A package for estimating mixed
                        cell type abundance in the regions of
                        spatially-resolved gene expression studies
TIL_barplot             Barplot of abundance estimates
cellcols                Default colors for the cell types in the
                        safeTME matrix
collapseCellTypes       Collapse related cell types within a
                        deconvolution result
create_profile_matrix   Create Custom Cell Profile Matrix
derive_GeoMx_background
                        Derive background at the scale of the
                        normalized data for GeoMx data
download_profile_matrix
                        Download a cell profile matrix
florets                 Draw coxcomb plots as points in a graphics
                        window
mean.resid.sd           Genes' biological variability in immune
                        deconvolution from TCGA.
mergeTumorIntoX         Estimate a tumor-specific profile and merge it
                        with the pre-specified cell profile matrix (X)
mini_geomx_dataset      Small example GeoMx data
mini_singleCell_dataset
                        Mini human colon single cell dataset
nsclc                   Large example GeoMx data
reverseDecon            Reverse deconvolution
runCollapseCellTypes    Run collapseCellTypes
runErrorModel           Apply error model to estimate technical SD from
                        raw counts
runMergeTumorIntoX      Run MergeTumorIntoX
runReverseDecon         Run Reversedecon
runspatialdecon         Run spatialdecon
safeTME                 SafeTME matrix
safeTME.matches         Mapping from granularly-defined cell
                        populations to broaded cell populations
spatialdecon            Mixed cell deconvolution of spatiall-resolved
                        gene expression data
