Rqc-package	Rqc-package
checkpoint	checkpoint
detectFileFormat	detectFileFormat
fromRRDNA	fromRRDNA
matdist	matdist
perCycleBasecall	RqcResultSet-class
perCycleBasecall,list-method	RqcResultSet-class
perCycleBasecall,RqcResultSet-method	RqcResultSet-class
perCycleQuality	RqcResultSet-class
perCycleQuality,list-method	RqcResultSet-class
perCycleQuality,RqcResultSet-method	RqcResultSet-class
perFileInformation	RqcResultSet-class
perFileInformation,list-method	RqcResultSet-class
perFileInformation,RqcResultSet-method	RqcResultSet-class
perFileTopReads	RqcResultSet-class
perFileTopReads,list-method	RqcResultSet-class
perFileTopReads,RqcResultSet-method	RqcResultSet-class
perReadFrequency	RqcResultSet-class
perReadFrequency,list-method	RqcResultSet-class
perReadFrequency,RqcResultSet-method	RqcResultSet-class
perReadQuality	RqcResultSet-class
perReadQuality,list-method	RqcResultSet-class
perReadQuality,RqcResultSet-method	RqcResultSet-class
perReadWidth	RqcResultSet-class
perReadWidth,list-method	RqcResultSet-class
perReadWidth,RqcResultSet-method	RqcResultSet-class
Rqc	Rqc-package
rqc	rqc
rqcCycleAverageQualityCalc	rqcCycleAverageQualityPlot
rqcCycleAverageQualityPcaCalc	rqcCycleAverageQualityPcaPlot
rqcCycleAverageQualityPcaPlot	rqcCycleAverageQualityPcaPlot
rqcCycleAverageQualityPlot	rqcCycleAverageQualityPlot
rqcCycleBaseCallsCalc	rqcCycleBaseCallsPlot
rqcCycleBaseCallsLinePlot	rqcCycleBaseCallsPlot
rqcCycleBaseCallsPlot	rqcCycleBaseCallsPlot
rqcCycleGCCalc	rqcCycleGCPlot
rqcCycleGCPlot	rqcCycleGCPlot
rqcCycleQualityBoxCalc	rqcCycleQualityBoxPlot
rqcCycleQualityBoxPlot	rqcCycleQualityBoxPlot
rqcCycleQualityCalc	rqcCycleQualityPlot
rqcCycleQualityPlot	rqcCycleQualityPlot
rqcFileHeatmap	rqcFileHeatmap
rqcGroupCycleAverageQualityCalc	rqcGroupCycleAverageQualityPlot
rqcGroupCycleAverageQualityPlot	rqcGroupCycleAverageQualityPlot
rqcQA	rqcQA
rqcQA,BamFile-method	rqcQA
rqcQA,character-method	rqcQA
rqcQA,FastqFile-method	rqcQA
rqcQA,list-method	rqcQA
rqcReadFrequencyCalc	rqcReadFrequencyPlot
rqcReadFrequencyPlot	rqcReadFrequencyPlot
rqcReadQualityBoxCalc	rqcReadQualityBoxPlot
rqcReadQualityBoxPlot	rqcReadQualityBoxPlot
rqcReadQualityCalc	rqcReadQualityPlot
rqcReadQualityPlot	rqcReadQualityPlot
rqcReadWidthCalc	rqcReadWidthPlot
rqcReadWidthPlot	rqcReadWidthPlot
rqcReport	rqcReport
RqcResultSet-class	RqcResultSet-class
rqcShinyReport	rqcShinyReport
stats4trim	stats4trim
subsetByGroup	subsetByGroup
subsetByPair	subsetByPair
toRRDNA	toRRDNA
