# Generated by roxygen2: do not edit by hand

export(DEG_plot)
export(RiboCrypt_app)
export(browseRC)
export(collection_dir_from_exp)
export(collection_path_from_exp)
export(make_rc_url)
export(multiOmicsPlot_ORFikExp)
export(multiOmicsPlot_animate)
export(multiOmicsPlot_list)
import(NGLVieweR)
import(ORFik)
import(bslib)
import(data.table)
import(fst)
import(ggplot2)
import(plotly, except = c(config, last_plot))
import(rclipboard)
import(shiny)
importFrom(BiocGenerics,"end<-")
importFrom(BiocGenerics,"start<-")
importFrom(BiocGenerics,"strand<-")
importFrom(BiocGenerics,end)
importFrom(BiocGenerics,start)
importFrom(BiocGenerics,strand)
importFrom(BiocParallel,bpmapply)
importFrom(BiocParallel,bpparam)
importFrom(Biostrings,AMINO_ACID_CODE)
importFrom(Biostrings,GENETIC_CODE)
importFrom(Biostrings,head)
importFrom(Biostrings,matchPattern)
importFrom(Biostrings,nchar)
importFrom(Biostrings,strsplit)
importFrom(Biostrings,translate)
importFrom(Biostrings,width)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,draw)
importFrom(ComplexHeatmap,row_order)
importFrom(DT,DTOutput)
importFrom(DT,datatable)
importFrom(DT,formatStyle)
importFrom(DT,renderDT)
importFrom(DT,styleInterval)
importFrom(GenomicFeatures,"seqlevels<-")
importFrom(GenomicFeatures,extractTranscriptSeqs)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,psetdiff)
importFrom(GenomicRanges,ranges)
importFrom(GenomicRanges,resize)
importFrom(IRanges,IRanges)
importFrom(IRanges,IRangesList)
importFrom(IRanges,findOverlaps)
importFrom(IRanges,subsetByOverlaps)
importFrom(RCurl,getURI)
importFrom(Seqinfo,seqlevels)
importFrom(Seqinfo,seqnames)
importFrom(cowplot,plot_grid)
importFrom(crosstalk,SharedData)
importFrom(crosstalk,bscols)
importFrom(crosstalk,filter_select)
importFrom(dplyr,`%>%`)
importFrom(fst,read_fst)
importFrom(grid,grid.grabExpr)
importFrom(htmlwidgets,onRender)
importFrom(httr,GET)
importFrom(httr,write_disk)
importFrom(jsonlite,fromJSON)
importFrom(knitr,knit)
importFrom(markdown,mark_html)
importFrom(rtracklayer,BigWigFile)
importFrom(shinyWidgets,prettySwitch)
importFrom(shinycssloaders,withSpinner)
importFrom(shinyhelper,helper)
importFrom(shinyjqui,jqui_draggable)
importFrom(shinyjqui,jqui_resizable)
importFrom(shinyjs,click)
importFrom(shinyjs,hideElement)
importFrom(shinyjs,showElement)
importFrom(shinyjs,useShinyjs)
importFrom(stringr,str_count)
importFrom(stringr,str_sub)
importFrom(writexl,write_xlsx)
