add_dataset	add_dataset
add_dataset,ReactomeAnalysisRequest,data.frame-method	add_dataset-ReactomeAnalysisRequest-data.frame-method
add_dataset,ReactomeAnalysisRequest,DGEList-method	add_dataset-ReactomeAnalysisRequest-DGEList-method
add_dataset,ReactomeAnalysisRequest,EList-method	add_dataset-ReactomeAnalysisRequest-EList-method
add_dataset,ReactomeAnalysisRequest,ExpressionSet-method	add_dataset-ReactomeAnalysisRequest-ExpressionSet-method
add_dataset,ReactomeAnalysisRequest,matrix-method	add_dataset-ReactomeAnalysisRequest-matrix-method
analyse_sc_clusters	analyse_sc_clusters
analyse_sc_clusters,Seurat-method	analyse_sc_clusters-Seurat-method
analyse_sc_clusters,SingleCellExperiment-method	analyse_sc_clusters-SingleCellExperiment-method
break_names	break_names
checkRequestValidity	checkRequestValidity
check_reactome_url	check_reactome_url
convert_reactome_result	convert_reactome_result
data_frame_as_string	data_frame_as_string
fetch_public_data	fetch_public_data
find_public_datasets	find_public_datasets
generate_metadata	generate_metadata
generate_metadata,data.frame-method	generate_metadata-data.frame-method
generate_pseudo_bulk_data	generate_pseudo_bulk_data
generate_pseudo_bulk_data,Seurat-method	generate_pseudo_bulk_data-Seurat-method
generate_pseudo_bulk_data,SingleCellExperiment-method	generate_pseudo_bulk_data-SingleCellExperiment-method
get_dataset_loading_status	get_dataset_loading_status
get_fc_for_dataset	get_fc_for_dataset
get_is_sig_dataset	get_is_sig_dataset
get_public_species	get_public_species
get_reactome_analysis_result	get_reactome_analysis_result
get_reactome_analysis_status	get_reactome_analysis_status
get_reactome_data_types	get_reactome_data_types
get_reactome_methods	get_reactome_methods
get_result	get_result
get_result,ReactomeAnalysisResult-method	get_result-ReactomeAnalysisResult-method
is_gsva_result	is_gsva_result
load_public_dataset	load_public_dataset
names,ReactomeAnalysisResult-method	names-ReactomeAnalysisResult-method
open_reactome	open_reactome
open_reactome,ReactomeAnalysisResult-method	open_reactome-ReactomeAnalysisResult-method
pathways	pathways
pathways,ReactomeAnalysisResult-method	pathways-ReactomeAnalysisResult-method
perform_reactome_analysis	perform_reactome_analysis
plot_correlations	plot_correlations
plot_correlations,ReactomeAnalysisResult-method	plot_correlations-ReactomeAnalysisResult-method
plot_gsva_heatmap	plot_gsva_heatmap
plot_gsva_heatmap,ReactomeAnalysisResult-method	plot_gsva_heatmap-ReactomeAnalysisResult-method
plot_gsva_pathway	plot_gsva_pathway
plot_gsva_pathway,ReactomeAnalysisResult-method	plot_gsva_pathway-ReactomeAnalysisResult-method
plot_gsva_pca	plot_gsva_pca
plot_gsva_pca,ReactomeAnalysisResult-method	plot_gsva_pca-ReactomeAnalysisResult-method
plot_heatmap	plot_heatmap
plot_heatmap,ReactomeAnalysisResult-method	plot_heatmap-ReactomeAnalysisResult-method
plot_volcano	plot_volcano
plot_volcano,ReactomeAnalysisResult-method	plot_volcano-ReactomeAnalysisResult-method
print,ReactomeAnalysisRequest-method	print-ReactomeAnalysisRequest-method
print,ReactomeAnalysisResult-method	print-ReactomeAnalysisResult-method
ReactomeAnalysisRequest	ReactomeAnalysisRequest
ReactomeAnalysisResult	ReactomeAnalysisResult-class
ReactomeAnalysisResult-class	ReactomeAnalysisResult-class
reactome_links	reactome_links
reactome_links,ReactomeAnalysisResult-method	reactome_links-ReactomeAnalysisResult-method
remove_dataset	remove_dataset
remove_dataset,ReactomeAnalysisRequest-method	remove_dataset-ReactomeAnalysisRequest-method
result_types	result_types
result_types,ReactomeAnalysisResult-method	result_types-ReactomeAnalysisResult-method
set_method	set_method
set_method,ReactomeAnalysisRequest-method	set_method-ReactomeAnalysisRequest-method
set_parameters	set_parameters
set_parameters,ReactomeAnalysisRequest-method	set_parameters-ReactomeAnalysisRequest-method
show,ReactomeAnalysisRequest-method	show-ReactomeAnalysisRequest-method
show,ReactomeAnalysisResult-method	show-ReactomeAnalysisResult-method
split_clustering	split_clustering
split_random_sce	split_random_sce
split_subclustering_sce	split_subclustering_sce
split_variable	split_variable
split_variable_random	split_variable_random
split_variable_sce	split_variable_sce
start_reactome_analysis	start_reactome_analysis
wait_for_loading_dataset	wait_for_loading_dataset
