associationAlterations
                        associationAlterations
associationPrognosis    associationPrognosis
associationSignatures   associationSignatures
association_mutations   List providing mutations as binary variables
                        and signatures assignments for 656 breast
                        cancer patients
association_survival    List providing clinical data and signatures
                        assignments for 359 pancreatic cancer patients
background              Germline replication error
background2             COSMIC replication error
cn_example_reduced      A reduced version of the copy number data for 5
                        TCGA samples in the format compatible with the
                        import function
getCNCounts             getCNCounts
getIDCounts             getIDCounts
getMNVCounts            getMNVCounts
getSBSCounts            getSBSCounts
groupsCNPlot            groupsCNPlot
groupsCXPlot            groupsCXPlot
groupsIDPlot            groupsIDPlot
groupsMNVPlot           groupsMNVPlot
groupsSBSPlot           groupsSBSPlot
id_example_reduced      A reduced version of the indel data for 3
                        samples in the format compatible with the
                        import function
patients                Point mutations for 560 breast tumors
patientsCNPlot          patientsCNPlot
patientsCXPlot          patientsCXPlot
patientsIDPlot          patientsIDPlot
patientsMNVPlot         patientsMNVPlot
patientsSBSPlot         patientsSBSPlot
plot_data_examples      List data structure to run examples
sbs_assignments         SBS assignments for 560 breast tumors
signaturesAssignment    signaturesAssignment
signaturesCNPlot        signaturesCNPlot
signaturesCV            signaturesCV
signaturesCXPlot        signaturesCXPlot
signaturesClustering    signaturesClustering
signaturesDecomposition
                        signaturesDecomposition
signaturesIDPlot        signaturesIDPlot
signaturesMNVPlot       signaturesMNVPlot
signaturesSBSPlot       signaturesSBSPlot
signaturesSignificance
                        signaturesSignificance
ssm560_reduced          A reduced version of the point mutations for
                        560 breast tumors in the format compatible with
                        the import function
