envPirat                Creates a BasiliskEnvironment class
estimate_gamma          Estimate missingness parameters Gamma
estimate_psi_df         Estimate psi and degrees of freedom
get_indexes_embedded_prots
                        Indexes of PGs embedded in each others
impute_block_llk_reset
                        Impute each PG.
impute_block_llk_reset_PG
                        Impute each PG.
impute_from_blocks      Impute abundance table from PGs results
pipeline_llkimpute      Pirat imputation function
pirat2SE                COnvert Pirat dataset to SummarizedExperiment
plot2hists              Plot 2 histograms
plot_pep_correlations   Empirical density of peptide correlations
rm_pg_from_idx_merge_pg
                        Remove PGs by index and merge
ropers                  Ropers dataset
split_large_pg          Split too large PGs
split_large_pg_PG       Splits too large PGs in proteogenomics context
subbouyssie             Sub-Bouyssie dataset
subropers               Sub-Ropers dataset
wrapper_pipeline_llkimpute
                        Imputation method using SummarizedExperiment
                        dataset
