delayed_initialization	delayed_initialization
delayed_optimization	delayed_optimization
initialization	initialization
nb.loglik.matrix	nb.loglik.matrix
newAIC	newAIC
newAIC,newmodel,matrix-method	newAIC
newAlpha	newAlpha
newAlpha,newmodel-method	newmodel-class
newBeta	newBeta
newBeta,newmodel-method	newmodel-class
newBIC	newBIC
newBIC,newmodel,matrix-method	newBIC
newEpsilon_alpha	newEpsilon_alpha
newEpsilon_alpha,newmodel-method	newmodel-class
newEpsilon_beta	newEpsilon_beta
newEpsilon_beta,newmodel-method	newmodel-class
newEpsilon_gamma	newEpsilon_gamma
newEpsilon_gamma,newmodel-method	newmodel-class
newEpsilon_W	newEpsilon_W
newEpsilon_W,newmodel-method	newmodel-class
newEpsilon_zeta	newEpsilon_zeta
newEpsilon_zeta,newmodel-method	newmodel-class
newFit	newFit
newFit,DelayedMatrix-method	newFit
newFit,dgCMatrix-method	newFit
newFit,matrix-method	newFit
newFit,SummarizedExperiment-method	newFit
newGamma	newGamma
newGamma,newmodel-method	newmodel-class
newloglik	newloglik
newloglik,newmodel,matrix-method	newloglik
newLogMu	newLogMu
newLogMu,newmodel-method	newmodel-class
newmodel	newmodel
newmodel-class	newmodel-class
newMu	newMu
newMu,newmodel-method	newmodel-class
newpenalty	newpenalty
newpenalty,newmodel-method	newpenalty
newPhi	newPhi
newPhi,newmodel-method	newmodel-class
newSim	newSim
newSim,newmodel-method	newSim
newTheta	newTheta
newTheta,newmodel-method	newmodel-class
newV	newV
newV,newmodel-method	newmodel-class
newW	newW
newW,newmodel-method	newmodel-class
newWave	newWave
newWave,SummarizedExperiment-method	newWave
newX	newX
newX,newmodel-method	newmodel-class
newZeta	newZeta
newZeta,newmodel-method	newmodel-class
numberFactors	numberFactors
numberFactors,newmodel-method	newmodel-class
numberFeatures	numberFeatures
numberFeatures,newmodel-method	newmodel-class
numberParams	numberParams
numberParams,newmodel-method	numberParams
numberSamples	numberSamples
numberSamples,newmodel-method	newmodel-class
optimization	optimization
setup	setup
show,newmodel-method	newmodel-class
