Package: NewWave
Type: Package
Title: Negative binomial model for scRNA-seq
Version: 1.20.0
Authors@R: c(person("Federico", "Agostinis", role = c("aut", "cre"),
                    email = "federico.agostinis@outlook.com"),
             person("Chiara", "Romualdi", role = "aut"),
             person("Gabriele", "Sales", role = "aut"),
             person("Davide", "Risso", role = "aut"))
Description: A model designed for dimensionality reduction and batch effect
    removal for scRNA-seq data. It is designed to be massively parallelizable 
    using shared objects that prevent memory duplication, and it can be used
    with different mini-batch approaches in order to reduce time consumption.
    It assumes a negative binomial distribution for the data with a dispersion
    parameter that can be both commonwise across gene both genewise. 
Depends: R (>= 4.0), SummarizedExperiment
Imports: methods, SingleCellExperiment, parallel, irlba, Matrix,
        DelayedArray, BiocSingular, SharedObject, stats
Suggests: testthat, rmarkdown, splatter, mclust, Rtsne, ggplot2, Rcpp,
        BiocStyle, knitr
License: GPL-3
VignetteBuilder: knitr
biocViews: Software, GeneExpression, Transcriptomics, SingleCell,
        BatchEffect, Sequencing, Coverage, Regression
Encoding: UTF-8
RoxygenNote: 7.1.1
BugReports: https://github.com/fedeago/NewWave/issues
git_url: https://git.bioconductor.org/packages/NewWave
git_branch: RELEASE_3_22
git_last_commit: abfdb4d
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 03:39:07 UTC; biocbuild
Author: Federico Agostinis [aut, cre],
  Chiara Romualdi [aut],
  Gabriele Sales [aut],
  Davide Risso [aut]
Maintainer: Federico Agostinis <federico.agostinis@outlook.com>
Built: R 4.5.1; ; 2025-10-30 09:33:53 UTC; unix
