Package: HiCool
Version: 1.10.0
Date: 2022-11-04
Title: HiCool
Authors@R: 
    person("Jacques", "Serizay", email="jacquesserizay@gmail.com",
        role=c("aut", "cre"))
Description: HiCool provides an R interface to process and normalize Hi-C 
    paired-end fastq reads into .(m)cool files. 
    .(m)cool is a compact, indexed HDF5 file format specifically tailored for 
    efficiently storing HiC-based data. 
    On top of processing fastq reads, HiCool provides a convenient reporting 
    function to generate shareable reports summarizing Hi-C experiments and 
    including quality controls. 
License: MIT + file LICENSE
URL: https://github.com/js2264/HiCool
BugReports: https://github.com/js2264/HiCool/issues
Depends: R (>= 4.2), HiCExperiment
Imports: BiocIO, S4Vectors, GenomicRanges, IRanges, InteractionSet,
        vroom, basilisk.utils, basilisk, reticulate, rmarkdown,
        rmdformats, plotly, dplyr, stringr, sessioninfo, utils
Suggests: HiContacts, HiContactsData, AnnotationHub, BiocFileCache,
        BiocStyle, testthat, knitr, rmarkdown
biocViews: HiC, DNA3DStructure, DataImport
Encoding: UTF-8
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Config/testthat/edition: 3
StagedInstall: no
git_url: https://git.bioconductor.org/packages/HiCool
git_branch: RELEASE_3_22
git_last_commit: 901249c
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 03:04:36 UTC; biocbuild
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay@gmail.com>
Built: R 4.5.1; ; 2025-10-30 09:27:41 UTC; unix
