Package: GreyListChIP
Type: Package
Version: 1.42.0
Title: Grey Lists -- Mask Artefact Regions Based on ChIP Inputs
Date: 2025-07-22
Authors@R: c(person("Matt","Eldridge", email="matthew.eldridge@cruk.cam.ac.uk",
                  role = c("cre")),
             person("Gord","Brown",email="DECEASED",
                  role="aut"))
Description: Identify regions of ChIP experiments with high signal in
        the input, that lead to spurious peaks during peak calling.
        Remove reads aligning to these regions prior to peak calling,
        for cleaner ChIP analysis.
License: Artistic-2.0
LazyLoad: yes
Depends: R (>= 4.0), methods, GenomicRanges
Imports: GenomicAlignments, BSgenome, Rsamtools, rtracklayer, MASS,
        parallel, Seqinfo, SummarizedExperiment, stats, utils
Suggests: BiocStyle, BiocGenerics, RUnit, BSgenome.Hsapiens.UCSC.hg19
biocViews: ChIPSeq, Alignment, Preprocessing, DifferentialPeakCalling,
        Sequencing, GenomeAnnotation, Coverage
git_url: https://git.bioconductor.org/packages/GreyListChIP
git_branch: RELEASE_3_22
git_last_commit: df5cbdf
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 02:59:29 UTC; biocbuild
Author: Matt Eldridge [cre],
  Gord Brown [aut]
Maintainer: Matt Eldridge <matthew.eldridge@cruk.cam.ac.uk>
Built: R 4.5.1; ; 2025-10-30 09:27:02 UTC; unix
