DifferentialRegulation
                        Discover differentially regulated genes from
                        single-cell RNA-seq data
DifferentialRegulation-package
                        Differentially regulated genes from scRNA-seq
                        data
DifferentialRegulation_bulk
                        Discover differentially regulated genes from
                        bulk RNA-seq data
compute_PB_counts       Discover differentially regulated genes
load_EC                 Create a list containing the equivalence
                        classes objects for the single-cell RNA-seq
                        data
load_USA                Creates a SingleCellExperiment containing the
                        estimated USA counts for the single-cell
                        RNA-seq data
load_bulk_EC            Create a list containing the equivalence
                        classes objects for the bulk RNA-seq data
load_bulk_US            Creates a SummarizedExperiment containing the
                        estimated US counts for the bulk RNA-seq data
plot_bulk_pi            Plot the estimated proportions of US counts in
                        each group - bulk RNA-seq data
plot_bulk_traceplot     Traceplot of the posterior chain of the
                        proportion (i.e., pi) of unspliced (U) counts
                        in each group - bulk RNA-seq data
plot_pi                 Plot the estimated proportions of US or USA
                        counts in each group - single-cell RNA-seq data
plot_traceplot          Traceplot of the posterior chain of the
                        proportion (i.e., pi) of unspliced (U) counts
                        in each group - single-cell RNA-seq data
