Infrastructure for Chromatographic Mass Spectrometry Data
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Documentation for package ‘Chromatograms’ version 0.99.6
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-- A --
| addProcessing-method | Efficiently processing 'Chromatograms' objects. |
| applyProcessing-method | Efficiently processing 'Chromatograms' objects. |
-- B --
| backendBpparam-method | Chromatographic MS Data Backends |
| backendInitialize-method | Chromatographic MS Data Backends |
| backendInitialize-method | Improved in-memory Chromatographic data backend |
| backendInitialize-method | Chromatographic Data Backend for Reading mzML Files |
| backendInitialize-method | Chromatographic Data Backend for Spectra Objects |
| backendMerge-method | Chromatographic MS Data Backends |
| backendParallelFactor-method | Chromatographic MS Data Backends |
-- C --
| Chromatograms | The Chromatograms class to manage and access chromatographic data |
| Chromatograms-class | The Chromatograms class to manage and access chromatographic data |
| Chromatograms-method | The Chromatograms class to manage and access chromatographic data |
| ChromBackend | Chromatographic MS Data Backends |
| ChromBackend-class | Chromatographic MS Data Backends |
| ChromBackendMemory | Improved in-memory Chromatographic data backend |
| ChromBackendMemory-class | Chromatographic MS Data Backends |
| ChromBackendMzR | Chromatographic Data Backend for Reading mzML Files |
| ChromBackendMzR-class | Chromatographic MS Data Backends |
| ChromBackendSpectra | Chromatographic Data Backend for Spectra Objects |
| ChromBackendSpectra-class | Chromatographic MS Data Backends |
| chromData | Chromatographic Peaks Metadata. |
| chromData-method | Chromatographic MS Data Backends |
| chromData-method | Chromatographic Peaks Metadata. |
| chromData<- | Chromatographic Peaks Metadata. |
| chromData<--method | Chromatographic MS Data Backends |
| chromData<--method | Chromatographic Peaks Metadata. |
| chromIndex | Chromatographic Peaks Metadata. |
| chromIndex-method | Chromatographic MS Data Backends |
| chromIndex-method | Chromatographic Peaks Metadata. |
| chromIndex<- | Chromatographic Peaks Metadata. |
| chromIndex<--method | Chromatographic MS Data Backends |
| chromIndex<--method | Chromatographic Peaks Metadata. |
| chromSpectraIndex | Chromatographic Data Backend for Spectra Objects |
| chromVariables | Chromatographic Peaks Metadata. |
| chromVariables-method | Chromatographic MS Data Backends |
| chromVariables-method | Chromatographic Peaks Metadata. |
| chromVariables<- | Chromatographic Peaks Metadata. |
| collisionEnergy | Chromatographic Peaks Metadata. |
| collisionEnergy-method | Chromatographic MS Data Backends |
| collisionEnergy-method | Chromatographic Peaks Metadata. |
| collisionEnergy<- | Chromatographic Peaks Metadata. |
| collisionEnergy<--method | Chromatographic MS Data Backends |
| collisionEnergy<--method | Chromatographic Peaks Metadata. |
| coreChromVariables | Chromatographic MS Data Backends |
| corePeaksVariables | Chromatographic MS Data Backends |
-- D --
| dataOrigin | Chromatographic Peaks Metadata. |
| dataOrigin-method | Chromatographic MS Data Backends |
| dataOrigin-method | Chromatographic Peaks Metadata. |
| dataOrigin<- | Chromatographic Peaks Metadata. |
| dataOrigin<--method | Chromatographic MS Data Backends |
| dataOrigin<--method | Chromatographic Peaks Metadata. |
-- E --
| extractByIndex | Chromatographic MS Data Backends |
| extractByIndex-method | Chromatographic MS Data Backends |
-- F --
| factorize | Chromatographic MS Data Backends |
| factorize-method | Chromatographic MS Data Backends |
| factorize-method | The Chromatograms class to manage and access chromatographic data |
| filterChromData | Chromatographic Peaks Metadata. |
| filterChromData-method | Chromatographic MS Data Backends |
| filterChromData-method | Chromatographic Peaks Metadata. |
| filterPeaksData | Chromatographic peaks data |
| filterPeaksData-method | Chromatographic MS Data Backends |
| filterPeaksData-method | Chromatographic peaks data |
-- I --
| intensity-method | Chromatographic MS Data Backends |
| intensity-method | Chromatographic peaks data |
| intensity<--method | Chromatographic MS Data Backends |
| intensity<--method | Chromatographic peaks data |
| isEmpty-method | Chromatographic MS Data Backends |
| isReadOnly-method | Chromatographic MS Data Backends |
-- L --
| length-method | Chromatographic MS Data Backends |
| length-method | Chromatographic Peaks Metadata. |
| lengths-method | Chromatographic MS Data Backends |
-- M --
| msLevel | Chromatographic Peaks Metadata. |
| msLevel-method | Chromatographic MS Data Backends |
| msLevel-method | Chromatographic Peaks Metadata. |
| msLevel<- | Chromatographic Peaks Metadata. |
| msLevel<--method | Chromatographic MS Data Backends |
| msLevel<--method | Chromatographic Peaks Metadata. |
| mz | Chromatographic Peaks Metadata. |
| mz-method | Chromatographic MS Data Backends |
| mz-method | Chromatographic Peaks Metadata. |
| mz<- | Chromatographic Peaks Metadata. |
| mz<--method | Chromatographic MS Data Backends |
| mz<--method | Chromatographic Peaks Metadata. |
| mzMax | Chromatographic Peaks Metadata. |
| mzMax-method | Chromatographic MS Data Backends |
| mzMax-method | Chromatographic Peaks Metadata. |
| mzMax<- | Chromatographic Peaks Metadata. |
| mzMax<--method | Chromatographic MS Data Backends |
| mzMax<--method | Chromatographic Peaks Metadata. |
| mzMin | Chromatographic Peaks Metadata. |
| mzMin-method | Chromatographic MS Data Backends |
| mzMin-method | Chromatographic Peaks Metadata. |
| mzMin<- | Chromatographic Peaks Metadata. |
| mzMin<--method | Chromatographic MS Data Backends |
| mzMin<--method | Chromatographic Peaks Metadata. |
-- P --
| peaksData | Chromatographic peaks data |
| peaksData-method | Chromatographic MS Data Backends |
| peaksData-method | Chromatographic peaks data |
| peaksData<--method | Chromatographic MS Data Backends |
| peaksData<--method | Chromatographic peaks data |
| peaksVariables | Chromatographic peaks data |
| peaksVariables-method | Chromatographic MS Data Backends |
| peaksVariables-method | Chromatographic peaks data |
| plotChromatograms | Plot chromatograms |
| plotChromatogramsOverlay | Plot chromatograms |
| precursorMz | Chromatographic Peaks Metadata. |
| precursorMz-method | Chromatographic MS Data Backends |
| precursorMz-method | Chromatographic Peaks Metadata. |
| precursorMz<- | Chromatographic Peaks Metadata. |
| precursorMz<--method | Chromatographic MS Data Backends |
| precursorMz<--method | Chromatographic Peaks Metadata. |
| precursorMzMax | Chromatographic Peaks Metadata. |
| precursorMzMax-method | Chromatographic MS Data Backends |
| precursorMzMax-method | Chromatographic Peaks Metadata. |
| precursorMzMax<- | Chromatographic Peaks Metadata. |
| precursorMzMax<--method | Chromatographic MS Data Backends |
| precursorMzMax<--method | Chromatographic Peaks Metadata. |
| precursorMzMin | Chromatographic Peaks Metadata. |
| precursorMzMin-method | Chromatographic MS Data Backends |
| precursorMzMin-method | Chromatographic Peaks Metadata. |
| precursorMzMin<- | Chromatographic Peaks Metadata. |
| precursorMzMin<--method | Chromatographic MS Data Backends |
| precursorMzMin<--method | Chromatographic Peaks Metadata. |
| processingChunkFactor-method | Efficiently processing 'Chromatograms' objects. |
| processingChunkSize-method | Efficiently processing 'Chromatograms' objects. |
| processingChunkSize<--method | Efficiently processing 'Chromatograms' objects. |
| processingQueue | Efficiently processing 'Chromatograms' objects. |
| productMz | Chromatographic Peaks Metadata. |
| productMz-method | Chromatographic MS Data Backends |
| productMz-method | Chromatographic Peaks Metadata. |
| productMz<- | Chromatographic Peaks Metadata. |
| productMz<--method | Chromatographic MS Data Backends |
| productMz<--method | Chromatographic Peaks Metadata. |
| productMzMax | Chromatographic Peaks Metadata. |
| productMzMax-method | Chromatographic MS Data Backends |
| productMzMax-method | Chromatographic Peaks Metadata. |
| productMzMax<- | Chromatographic Peaks Metadata. |
| productMzMax<--method | Chromatographic MS Data Backends |
| productMzMax<--method | Chromatographic Peaks Metadata. |
| productMzMin | Chromatographic Peaks Metadata. |
| productMzMin-method | Chromatographic MS Data Backends |
| productMzMin-method | Chromatographic Peaks Metadata. |
| productMzMin<- | Chromatographic Peaks Metadata. |
| productMzMin<--method | Chromatographic MS Data Backends |
| productMzMin<--method | Chromatographic Peaks Metadata. |
-- R --
| reset-method | Chromatographic MS Data Backends |
| rtime-method | Chromatographic MS Data Backends |
| rtime-method | Chromatographic peaks data |
| rtime<--method | Chromatographic MS Data Backends |
| rtime<--method | Chromatographic peaks data |
-- S --
| setBackend-method | The Chromatograms class to manage and access chromatographic data |
| split-method | Chromatographic MS Data Backends |
| supportsSetBackend-method | Chromatographic MS Data Backends |
-- misc --
| $-method | Chromatographic MS Data Backends |
| $-method | The Chromatograms class to manage and access chromatographic data |
| $<--method | Chromatographic MS Data Backends |
| $<--method | The Chromatograms class to manage and access chromatographic data |
| [-method | Chromatographic MS Data Backends |
| [-method | The Chromatograms class to manage and access chromatographic data |
| [<--method | The Chromatograms class to manage and access chromatographic data |
| [[-method | Chromatographic MS Data Backends |
| [[-method | The Chromatograms class to manage and access chromatographic data |
| [[<--method | Chromatographic MS Data Backends |
| [[<--method | The Chromatograms class to manage and access chromatographic data |