# Generated by roxygen2: do not edit by hand

export(Spock)
export(base2IndVec)
export(base2Indexing)
export(bcbn)
export(ctcbn)
export(ctcbnSingle)
export(edgeMarginalized)
export(generateData)
export(generateMatrixGenotypes)
export(generateTCGAMatrix)
export(genotypeFeasibility)
export(genotypeMatrixMutator)
export(getExamples)
export(getRawTCGAData)
export(hcbn)
export(hcbnSingle)
export(jensenShannonDivergence)
export(pathEdgeMapper)
export(pathNormalization)
export(pathProbCBN)
export(pathProbQuartetBCBN)
export(pathProbQuartetCTCBN)
export(pathProbQuartetHCBN)
export(pathProbQuartetRCBN)
export(pathProbSSWM)
export(pathwayCompatibilityQuartet)
export(pathwayFeasibility)
export(pathwayGenotypeCompatibility)
export(pathwayWeightingRCBN)
export(permutations)
export(posetWeightingRCBN)
export(predictability)
export(readLambda)
export(readPattern)
export(readPoset)
export(readTime)
export(transitiveClosure)
export(visualizeCBNModel)
export(visualizeFitnessLandscape)
export(visualizeProbabilities)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpoptions)
importFrom(BiocParallel,bpprogressbar)
importFrom(R6,R6Class)
importFrom(TCGAbiolinks,GDCdownload)
importFrom(TCGAbiolinks,GDCprepare)
importFrom(TCGAbiolinks,GDCquery)
importFrom(TCGAbiolinks,getGDCprojects)
importFrom(coda,gelman.diag)
importFrom(coda,mcmc)
importFrom(coda,mcmc.list)
importFrom(cowplot,draw_line)
importFrom(cowplot,ggdraw)
importFrom(ggplot2,aes)
importFrom(ggplot2,arrow)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_void)
importFrom(ggplot2,unit)
importFrom(ggraph,circle)
importFrom(ggraph,geom_edge_link)
importFrom(ggraph,geom_node_point)
importFrom(ggraph,geom_node_text)
importFrom(ggraph,ggraph)
importFrom(grDevices,rainbow)
importFrom(graphics,image)
importFrom(graphics,par)
importFrom(igraph,graph.adjacency)
importFrom(igraph,gsize)
importFrom(igraph,topological.sort)
importFrom(magrittr,"%>%")
importFrom(patchwork,wrap_plots)
importFrom(rlang,call2)
importFrom(rlang,sym)
importFrom(stats,rbinom)
importFrom(stats,runif)
importFrom(tidygraph,activate)
importFrom(tidygraph,mutate)
importFrom(tidygraph,pull)
importFrom(tidygraph,tbl_graph)
useDynLib(CBN2Path, .registration=TRUE)
