AMARETTO_CreateModuleData
                        AMARETTO_CreateModuleData
AMARETTO_CreateRegulatorPrograms
                        AMARETTO_CreateRegulatorPrograms
AMARETTO_Download       AMARETTO_Download
AMARETTO_EvaluateTestSet
                        AMARETTO_EvaluateTestSet
AMARETTO_ExportResults
                        AMARETTO_ExportResults
AMARETTO_HTMLreport     AMARETTO_HTMLreport
AMARETTO_Initialize     AMARETTO_Initialize (version: reorder and
                        filter MA_Matrix)
AMARETTO_Preprocess     AMARETTO_Preprocess
AMARETTO_Run            AMARETTO_Run Function to run AMARETTO, a
                        statistical algorithm to identify cancer
                        drivers by integrating a variety of omics data
                        from cancer and normal tissue.
AMARETTO_VisualizeModule
                        AMARETTO_VisualizeModule
BatchData               BatchData
Driver_Genes            Driver_Genes
MsigdbMapping           MsigdbMapping
ProcessedDataLIHC       ProcessedDataLIHC
plot_run_history        Title plot_run_history
read_gct                read_gct
