qsmooth
This is the development version of qsmooth; for the stable release version, see qsmooth.
Smooth quantile normalization
Bioconductor version: Development (3.21)
Smooth quantile normalization is a generalization of quantile normalization, which is average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.
Author: Stephanie C. Hicks [aut, cre] (ORCID:
Maintainer: Stephanie C. Hicks <shicks19 at jhu.edu>
citation("qsmooth")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("qsmooth")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qsmooth")| The qsmooth user's guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BatchEffect, Microarray, MultipleComparison, Normalization, Preprocessing, RNASeq, Sequencing, Software |
| Version | 1.23.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.0) |
| Imports | SummarizedExperiment, utils, sva, stats, methods, graphics, Hmisc |
| System Requirements | |
| URL |
See More
| Suggests | bodymapRat, quantro, knitr, rmarkdown, BiocStyle, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | CleanUpRNAseq |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | qsmooth_1.23.0.tar.gz |
| Windows Binary (x86_64) | qsmooth_1.23.0.zip (64-bit only) |
| macOS Binary (x86_64) | qsmooth_1.23.0.tgz |
| macOS Binary (arm64) | qsmooth_1.23.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/qsmooth |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/qsmooth |
| Bioc Package Browser | https://code.bioconductor.org/browse/qsmooth/ |
| Package Short Url | https://bioconductor.org/packages/qsmooth/ |
| Package Downloads Report | Download Stats |