microbiome
This is the development version of microbiome; for the stable release version, see microbiome.
Microbiome Analytics
Bioconductor version: Development (3.21)
Utilities for microbiome analysis.
Author: Leo Lahti [aut, cre] (ORCID:
Maintainer: Leo Lahti <leo.lahti at iki.fi>
Citation (from within R, enter
citation("microbiome")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("microbiome")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Metagenomics, Microbiome, Sequencing, Software, SystemsBiology |
| Version | 1.29.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (7 years) |
| License | BSD_2_clause + file LICENSE |
| Depends | R (>= 3.6.0), phyloseq, ggplot2 |
| Imports | Biostrings, compositions, dplyr, reshape2, Rtsne, scales, stats, tibble, tidyr, utils, vegan |
| System Requirements | |
| URL | http://microbiome.github.io/microbiome |
| Bug Reports | https://github.com/microbiome/microbiome/issues |
See More
| Suggests | BiocGenerics, BiocStyle, Cairo, knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | microbiome_1.29.0.zip (64-bit only) |
| macOS Binary (x86_64) | microbiome_1.29.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/microbiome |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/microbiome |
| Bioc Package Browser | https://code.bioconductor.org/browse/microbiome/ |
| Package Short Url | https://bioconductor.org/packages/microbiome/ |
| Package Downloads Report | Download Stats |