# Generated by roxygen2: do not edit by hand

export("setDeps<-")
export("setGenesUsed<-")
export("setParams<-")
export("setSignatures<-")
export("setSpillMat<-")
export(getDeps)
export(getGenesUsed)
export(getParams)
export(getSignatures)
export(getSpillMat)
export(xCell2Analysis)
export(xCell2GetLineage)
export(xCell2Train)
exportClasses(xCell2Object)
exportMethods("setDeps<-")
exportMethods("setGenesUsed<-")
exportMethods("setParams<-")
exportMethods("setSignatures<-")
exportMethods("setSpillMat<-")
exportMethods(getDeps)
exportMethods(getGenesUsed)
exportMethods(getParams)
exportMethods(getSignatures)
exportMethods(getSpillMat)
importFrom(AnnotationHub,AnnotationHub)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bplapply)
importFrom(Matrix,Diagonal)
importFrom(Matrix,colSums)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Rfast,Sort)
importFrom(Rfast,rowMedians)
importFrom(Rfast,rowmeans)
importFrom(Rfast,rowsums)
importFrom(SingleCellExperiment,colData)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_all)
importFrom(dplyr,pull)
importFrom(dplyr,right_join)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(magrittr,"%>%")
importFrom(methods,new)
importFrom(minpack.lm,nlsLM)
importFrom(ontologyIndex,get_ancestors)
importFrom(ontologyIndex,get_descendants)
importFrom(pracma,lsqlincon)
importFrom(progress,progress_bar)
importFrom(quadprog,solve.QP)
importFrom(readr,read_tsv)
importFrom(readr,write_tsv)
importFrom(singscore,rankGenes)
importFrom(singscore,simpleScore)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,lm)
importFrom(stats,quantile)
importFrom(stats,var)
importFrom(tibble,as_tibble)
importFrom(tibble,tibble)
importFrom(tidyselect,everything)
importFrom(utils,data)
