BeadSorted.Saliva.EPIC

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see BeadSorted.Saliva.EPIC.

Illumina EPIC data on BeadSorted child saliva cells

Bioconductor version: 3.20

Raw data objects used to estimate saliva cell proportion estimates in ewastools. The FlowSorted.Saliva.EPIC object is constructed from samples assayed by Lauren Middleton et. al. (2021).

Author: Jonah Fisher [aut, cre], Kelly Bakulski [aut], Lauren Middleton [aut]

Maintainer: Jonah Fisher <jazzfish at umich.edu>

Citation (from within R, enter citation("BeadSorted.Saliva.EPIC")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BeadSorted.Saliva.EPIC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BeadSorted.Saliva.EPIC")

BeadSorted.Saliva.EPIC.html	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version	1.14.0
License	GPL-3
Depends	R (>= 4.1), minfi(>= 1.36.0), ExperimentHub
Imports
System Requirements
URL

Suggests	knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BeadSorted.Saliva.EPIC_1.14.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/BeadSorted.Saliva.EPIC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BeadSorted.Saliva.EPIC
Package Short Url	https://bioconductor.org/packages/BeadSorted.Saliva.EPIC/
Package Downloads Report	Download Stats