Changes in version 1.1.3                        

New

  - (User-facing) Enables choosing the out device type for motif
    heatmaps

                        Changes in version 1.1.2                        

New

  - (User-facing) Ability to generate HTML reports to view large
    combined panels for multiple processed samples as scrollable
    carousels

                       Changes in version 0.99.10                       

New

  - (User-facing) Alternative function plot_motif_heatmaps2() combines
    the heatmap scale with the heatmaps. Also, can choose to output PNG
    or JPEG files

                      Changes in version 0.99.0.10                      

New

  - (User-facing) An alternative function to plot motif heatmaps using
    the R pkg seqPattern. Function name: plot_motif_heatmaps2()

                      Changes in version 0.99.0.7                       

New

  - (User-facing) Now possible to perform per cluster GO term enrichment
    analysis via per_cluster_go_term_enrichments() when a orgDb package
    is available for the organism

                      Changes in version 0.99.0.6                       

New

  - (User-facing) Examples added majority of functions using
    example/dummy data

                      Changes in version 0.99.0.5                       

Bug-fixes

  - (User-facing) In per_cluster_annotations():
      - Default for clusts set to NULL. This enables cleanly specifying
        just the BED file as input to tc_gr
      - Help pages now have examples except for the curate_clusters
        function. Elaborate documentation for this function is available
        as part of the vignette

                      Changes in version 0.99.0.4                       

New features

  - (User-facing) In write_seqArchR_cluster_track_bed():
      - new argument use_q_bound to choose if you wish to use quantiles
        as tag cluster boundaries
      - new argument use_as_names to specify any column in info_df to be
        used as the name column in the output track BED file of clusters
      - dominant_ctss information for each tag cluster is presented as
        thickStart thickEnd for ease of visualising. See documentation
        for more details
  - (User-facing) In per_cluster_annotations():
      - tc_gr can now accept a bedfile to read records as a GRanges
        object
      - Details added in documentation for ways to selectively pick
        clusters to annotate

                      Changes in version 0.99.0.3                       

Bux-fixes

  - Fixed bugs in curate_clusters() function, and touch up its
    documentation

                      Changes in version 0.99.0.2                       

New features

  - (User-facing) Parallelization support to speed up annotating genomic
    regions

                       Changes in version 0.99.0                        

New

  - Package ready for Bioconductor submission