Changes in version 1.4.4 (2023-10-09)                  

  - Remove databases that are no longer supported: pathbank, panther,
    pharmgkb, smpdb

                 Changes in version 1.4.3 (2023-07-31)                  

  - Updated the perturbation scoring step to account for the orientiaton
    of topology matrices for KEGG pathways (row - Downstream genes;
    column - Upstream genes)
  - Add prefix parameter to the weight_ss_fc function to allow
    user-specified prefix that are other than "ENTREZID:"

                 Changes in version 1.4.2 (2023-07-12)                  

  - Updated the permtuation strategy so that the
    generate_permuted_scores function now construct all possible
    permuted pairs by default
  - Updated the plot_community function so KEGG pathways that are not
    assigned to categories will be ignored in community labeling

                 Changes in version 1.1.0 (2022-06-27)                  

  - Fixed a few typos

                 Changes in version 1.0.3 (2022-11-24)                  

  - Replaced compute_perturbation_score with raw_gene_pert,
    path_gene_per and rank_gene_pert to allow the scoring of gene-wise
    perturbation
  - Added 3 new visualisation functions: plot_gene_contribution,
    plot_community and plot_gs2gene
  - Demonstrated the use of new functions in the updated version of
    vignette

                 Changes in version 1.0.2 (2022-08-03)                  

  - Fixed a missing column name problems in weight_ss_fc

                 Changes in version 0.99.0 (2022-03-28)                 

  - Submitted to Bioconductor