Changes in version 1.1.22                        

  - Expanded and clarified error messages for pathwayEnrichment input
  - Updated vignette

                       Changes in version 1.1.18                        

  - Fixed bug for pathwayEnrichment when running fgsea (NA gene names)

                       Changes in version 1.1.17                        

  - Fix for default parameters and theme settings in ppiPlotNetwork
  - Support for GSEA (via package fgsea), both as an option in
    pathwayPlots and pathwayEnrichment
  - Global fontSize argument added to pathwayPlots

                       Changes in version 1.1.10                        

  - Support for KEGG pathways when running pathwayEnrichment, either
    through Sigora or traditional over-representation

                        Changes in version 1.1.8                        

  - pathwayPlots now supports the output from fgsea on Reactome pathways
    (109a173)

                        Changes in version 1.1.7                        

  - Size of asterisks in pathwayPlots is set based on tringle size
    (1f9b751)

                        Changes in version 1.1.6                        

  - Updated installation information in README
  - "eruption" gained argument "labelCutoffs" to add labels to p value
    and fold change cutoff lines
  - "ppiPlotNetwork" checks for argument "labelColumn" when "label=TRUE"
  - Fixed some tests

                      Changes in version 0.99.380                       

Lots of updates, including:

  - Updated documentation for data and functions
  - Cleaner vignette
  - Better support for Bioconductor classes
  - Better handling of data loading

                      Changes in version 0.99.352                       

  - Added value tag to data documentation

                      Changes in version 0.99.350                       

  - Rewrite of pathwayPlots to be more efficient

                      Changes in version 0.99.332                       

  - Changed methodology for importing functions
  - Added two new functions for PPI networks: "ppiEnrichNetwork" and
    "ppiExtractSubnetwork"

                      Changes in version 0.99.317                       

  - Renamed a number of functions to improve consistency, and make it
    clear which ones are related and part of the same "workflow"

                      Changes in version 0.99.310                       

  - Big update to the vignette
  - Update to the README and added in the package hex logo
  - Various function tweaks and minor changes

                      Changes in version 0.99.300                       

  - Renamed package to pathlinkR

                       Changes in version 0.99.1                        

  - Prepared for bioconductor submission