Changes in version 0.99.120 (2023-06-29)                

General

    o   After the iNETgrate package was added to Bioconductor, Habil
	removed it from the Bitbucket and Github repositories.

                Changes in version 0.99.102 (2023-06-12)                

Changes in existing functions

    o   In prepareSurvival and cleanAllData function, the default
	values changes as follows: riskLow="Low" and riskHigh="High",
	respectively.

                Changes in version 0.99.100 (2023-06-09)                

Changes in existing functions

    o   The Labels argument is removed from analyzeSurvival.  and the
	riskCol argument is added.

                Changes in version 0.99.96 (2023-06-08)                 

Changes in existing functions

    o   The abnormalityCol argument is removed from accelFailAnalysis.

    o   The otherLabel argument is removed from prepareSurvival and
	cleanAllData functions.

                Changes in version 0.99.94 (2023-06-08)                 

Changes in existing functions

    o   The computeEigengenes, computeEigenloci, and sample2atient
	functions were renamed to computEigengenes, computEigenloci,
	and sample2pat, respectively.

    o   The makeNetwork function now saves the result for each mu in a
	separate folder.

                Changes in version 0.99.74 (2023-05-24)                 

General

    o   Data were compressed using "xz" to save 20% space.

Changes in existing functions

    o   The downloaData function is not exported anymore because it is
	specific to the legacy TCGA data, which is no longer available.

                Changes in version 0.99.70 (2023-05-23)                 

Changes in existing functions

    o   Habil renamed downloadData to downloaData and updated the
	data.category argument of GDCquery.

    o   Habil removed the legacy option from the donwlowData function
	because it is no longer supported by TCGAbiolinks.

                Changes in version 0.99.64 (2023-05-11)                 

General

    o   Habil commented the installation command line in the vignette.

                Changes in version 0.99.50 (2023-04-14)                 

General

    o   Habil changed function names to camelCase i.e, from
	function.name to functionName.

                Changes in version 0.99.46 (2023-04-11)                 

General

    o   Habil changed getwd() to tempdr() in the docs.

    o   Habil changed most of occurrences of cat() to paste().

    o   Habil changed most of occurrences of print() to message() or
	Pigengene::message.if().

    o   Habil removed paste() inside all stop() to warning().

    o   Habil replaced dontrun with donttest.

                Changes in version 0.99.30 (2023-04-06)                 

General

    o   Tested on R 4.3.

    o   TCGAbiolinks (<= 2.24.3) because of issues with newer versions.

                 Changes in version 0.5.42 (2021-10-31)                 

General

    o   Being prepared for submission to Bioconductor.

    o   Created.