Changes in version 0.99.3                        

NEW FEATURES

  - Created an output type object (CBEAout). This is an S3 type object
    that is essentially a list that incorporates the final score matrix
    as well as other diagnostic details.

SIGNIFICANT USER-VISIBLE CHANGES

  - Due to the new feature above, now instead of getting a tibble, users
    would have to extract the scores out either using the provided
    function or use a custom approach based on the list-of-list format
    of the CBEAout objects.
  - Implemented tidy and glance methods to deal with CBEAout objects

BUG FIXES

None

                       Changes in version 0.99.2                        

NEW FEATURES

  - Added an option (parametric) to specify whether the null is
    estimated parametrically or via pure permutation. To support this,
    an option (n_perm) was also added to specify the number of
    permutations. A warning will be added if parametric is FALSE but
    n_boot is small (< 100)
  - Added option (parallel_backend) to specify the parallel backend of
    the loop using BiocParallel
  - Argument control now allow for a special slot titled fix_comp that
    can specify which component of the two-component mixture
    distribution to fix during the adjustment process.

SIGNIFICANT USER-VISIBLE CHANGES

  - Combined raw argument with output argument for the CBEA function to
    specify returning raw CBEA scores (without any distribution fitting
    and transformation).
  - New and revamped vignettes
  - Significant reduction in dependencies, including removing native
    support for phyloseq

BUG FIXES

None

                       Changes in version 0.99.1                        

NEW FEATURES

None

SIGNIFICANT USER-VISIBLE CHANGES

None

BUG FIXES

  - Removed .Rproj file to conform with Bioconductor error

                       Changes in version 0.99.0                        

NEW FEATURES

  - Added a NEWS.md file to track changes to the package.
  - Added a complete functionality to perform CBEA from scratch with
    bundled data set

SIGNIFICANT USER-VISIBLE CHANGES

None

BUG FIXES

None