groHMM

This is the released version of groHMM; for the devel version, see groHMM.

GRO-seq Analysis Pipeline

Bioconductor version: Release (3.20)

A pipeline for the analysis of GRO-seq data.

Author: Charles G. Danko, Minho Chae, Andre Martins, W. Lee Kraus

Maintainer: Tulip Nandu <tulip.nandu at utsouthwestern.edu>, W. Lee Kraus <lee.kraus at utsouthwestern.edu>

Citation (from within R, enter citation("groHMM")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("groHMM")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("groHMM")

biocViews	Sequencing, Software
Version	1.40.3
In Bioconductor since	BioC 3.0 (R-3.1) (10 years)
License	GPL-3
Depends	R (>= 3.0.2), MASS, parallel, S4Vectors(>= 0.17.25), IRanges(>= 2.13.12), GenomeInfoDb, GenomicRanges(>= 1.31.8), GenomicAlignments(>= 1.15.6), rtracklayer(>= 1.39.7)
Imports
System Requirements
URL	https://github.com/Kraus-Lab/groHMM
Bug Reports	https://github.com/Kraus-Lab/groHMM/issues

Suggests	BiocStyle, GenomicFeatures, edgeR, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	groHMM_1.40.3.tar.gz
Windows Binary (x86_64)	groHMM_1.40.3.zip (64-bit only)
macOS Binary (x86_64)	groHMM_1.40.3.tgz
macOS Binary (arm64)	groHMM_1.40.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/groHMM
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/groHMM
Bioc Package Browser	https://code.bioconductor.org/browse/groHMM/
Package Short Url	https://bioconductor.org/packages/groHMM/
Package Downloads Report	Download Stats