brainflowprobes
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.20 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see brainflowprobes.
Plots and annotation for choosing BrainFlow target probe sequence
Bioconductor version: Release (3.20)
Use these functions to characterize genomic regions for BrainFlow target probe design.
Author: Amanda Price [aut, cre] 
, Leonardo Collado-Torres [ctb]
Maintainer: Amanda Price <amanda.joy.price at gmail.com>
citation("brainflowprobes")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("brainflowprobes")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Coverage, ExperimentalDesign, FlowCytometry, GeneTarget, Software, Transcriptomics, Visualization |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.6.0) |
| Imports | Biostrings(>= 2.52.0), BSgenome.Hsapiens.UCSC.hg19(>= 1.4.0), bumphunter(>= 1.26.0), cowplot (>= 1.0.0), derfinder(>= 1.18.1), derfinderPlot(>= 1.18.1), GenomicRanges(>= 1.36.0), ggplot2 (>= 3.1.1), RColorBrewer (>= 1.1), utils, grDevices, GenomicState(>= 0.99.7) |
| System Requirements | |
| URL | https://github.com/LieberInstitute/brainflowprobes |
| Bug Reports | https://support.bioconductor.org/t/brainflowprobes |
See More
| Suggests | BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 2.1.0), covr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | brainflowprobes_1.20.0.zip (64-bit only) |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/brainflowprobes |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/brainflowprobes |
| Package Short Url | https://bioconductor.org/packages/brainflowprobes/ |
| Package Downloads Report | Download Stats |