sesameData

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see sesameData.

Supporting Data for SeSAMe Package

Bioconductor version: 3.19

Provides supporting annotation and test data for SeSAMe package. This includes chip tango addresses, mapping information, performance annotation, and trained predictor for Infinium array data. This package provides user access to essential annotation data for working with many generations of the Infinium DNA methylation array. Current we support human array (HM27, HM450, EPIC), mouse array (MM285) and the HorvathMethylChip40 (Mammal40) array.

Author: Wanding Zhou [aut, cre] , Hui Shen [aut], Timothy Triche [ctb]

Maintainer: Wanding Zhou <zhouwanding at gmail.com>

Citation (from within R, enter citation("sesameData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sesameData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sesameData")

sesameData User Guide	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, Genome, MethylationArrayData, MicroarrayData
Version	1.22.0
License	Artistic-2.0
Depends	R (>= 4.2.0), ExperimentHub, AnnotationHub
Imports	utils, readr, stringr, GenomicRanges, S4Vectors, IRanges, GenomeInfoDb
System Requirements
URL	https://github.com/zwdzwd/sesame
Bug Reports	https://github.com/zwdzwd/sesame/issue

Suggests	BiocGenerics, sesame, testthat, knitr, rmarkdown
Linking To
Enhances
Depends On Me	sesame
Imports Me	MethReg, knowYourCG, CytoMethIC
Suggests Me	ELMER, iNETgrate
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sesameData_1.22.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/sesameData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sesameData
Package Short Url	https://bioconductor.org/packages/sesameData/
Package Downloads Report	Download Stats